STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0843Conserved hypothetical protein. (414 aa)    
Predicted Functional Partners:
MCP_0842
Conserved hypothetical protein.
      0.865
MCP_0840
UDP-glucose/GDP-mannose dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.807
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
  
  
 0.772
rfbA
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.762
MCP_0841
Hypothetical protein.
       0.746
rfbB
dTDP-glucose 4,6-dehydratase.
  
  
 0.725
MCP_0844
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF354 family (IPR007152).
 
   
 0.687
MCP_0244
Hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216); Contains two Glycosyl transferase, family 2 domains (IPR001173).
  
  
 0.662
MCP_0517
Putative dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.608
rfbC
Putative dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.608
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.