STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0852Putative oxidoreductase. (352 aa)    
Predicted Functional Partners:
MCP_0897
Conserved hypothetical protein; Contains the Bacterial transferase hexapeptide repeat (IPR001451).
 
  
 0.913
MCP_0853
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.869
MCP_0854
Conserved hypothetical protein; Contains the Bacterial transferase hexapeptide repeat (IPR001451).
 
  
 0.837
MCP_0855
Putative ParB-like nuclease.
 
    0.796
MCP_0851
Putative glycosyltransferase.
 
  
 0.795
MCP_0848
Conserved hypothetical protein; Belongs to the N-acetylglucosaminylphosphatidylinositol deacetylase family (IPR003737).
  
  
 0.785
MCP_0850
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF354 family (IPR007152).
       0.756
MCP_0847
Conserved hypothetical protein.
       0.746
MCP_0849
Conserved hypothetical protein.
       0.746
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
 
 0.611
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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