STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0855Putative ParB-like nuclease. (264 aa)    
Predicted Functional Partners:
MCP_0852
Putative oxidoreductase.
 
    0.801
MCP_0854
Conserved hypothetical protein; Contains the Bacterial transferase hexapeptide repeat (IPR001451).
  
    0.757
MCP_0853
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.755
MCP_0851
Putative glycosyltransferase.
  
    0.741
MCP_0848
Conserved hypothetical protein; Belongs to the N-acetylglucosaminylphosphatidylinositol deacetylase family (IPR003737).
       0.723
MCP_0847
Conserved hypothetical protein.
       0.721
MCP_0849
Conserved hypothetical protein.
       0.721
MCP_0850
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF354 family (IPR007152).
       0.721
MCP_0846
Conserved hypothetical protein.
       0.452
iscS-2
Probable cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
    0.422
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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