STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0873Putative AAA ATPase. (322 aa)    
Predicted Functional Partners:
MCP_0872
Contains one Protein of unknown function DUF58 domain (IPR002881).
 
  
 0.925
MCP_0874
Conserved hypothetical protein.
       0.770
MCP_0875
Hypothetical protein.
       0.751
MCP_0876
Conserved hypothetical protein.
       0.750
MCP_0871
Conserved hypothetical protein.
       0.701
MCP_0870
Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674).
       0.689
MCP_1526
Conserved hypothetical protein; Contains one Protein of unknown function DUF58 domain (IPR002881).
 
  
 0.612
MCP_0877
Hypothetical protein.
       0.525
MCP_0878
Hypothetical protein.
       0.495
MCP_2676
Conserved hypothetical protein; Belongs to the GHMP kinase-like, archaeal family (IPR012043).
   
    0.434
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.