Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_0874Conserved hypothetical protein. (315 aa)    
Predicted Functional Partners:
MCP_0872
Contains one Protein of unknown function DUF58 domain (IPR002881).
  
    0.894
MCP_0876
Conserved hypothetical protein.
       0.889
MCP_0875
Hypothetical protein.
       0.808
MCP_0871
Conserved hypothetical protein.
  
    0.806
MCP_0873
Putative AAA ATPase.
       0.778
MCP_0870
Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674).
  
    0.692
MCP_0877
Hypothetical protein.
       0.549
MCP_0878
Hypothetical protein.
       0.514
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
      
 0.448
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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