STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0877Hypothetical protein. (834 aa)    
Predicted Functional Partners:
MCP_0878
Hypothetical protein.
       0.737
MCP_0874
Conserved hypothetical protein.
       0.549
MCP_0876
Conserved hypothetical protein.
       0.547
MCP_0875
Hypothetical protein.
       0.537
MCP_0872
Contains one Protein of unknown function DUF58 domain (IPR002881).
       0.522
MCP_0873
Putative AAA ATPase.
       0.522
MCP_0879
Hypothetical protein.
       0.495
MCP_0870
Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674).
       0.457
MCP_0871
Conserved hypothetical protein.
       0.457
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.