STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0882Conserved hypothetical protein; Belongs to the Peptidase S26B, eukaryotic signal peptidase family (IPR001733). (211 aa)    
Predicted Functional Partners:
MCP_0003
Conserved hypothetical protein.
     
  0.900
MCP_0048
Conserved hypothetical protein.
     
  0.900
MCP_2999
Putative signal sequence peptidase.
     
  0.900
MCP_0888
Hypothetical protein.
      0.743
MCP_0883
Conserved hypothetical protein.
       0.618
MCP_0901
Conserved hypothetical protein; Contains one Alpha/beta hydrolase fold-1 domain (IPR000073).
  
 
 0.545
MCP_0881
Putative transposase for insertion sequence element.
       0.504
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
  
 0.469
rps24e
30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
    0.448
rpoE1
DNA-directed RNA polymerase subunit E'.
       0.436
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.