STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0892Putative glycosyltransferase. (333 aa)    
Predicted Functional Partners:
MCP_0893
Putative glycosyltransferase.
 
    
0.831
MCP_0891
Hypothetical protein.
       0.782
MCP_0894
Putative glycosyltransferase.
 
  
 0.762
MCP_1667
Conserved hypothetical protein.
   
 
 0.761
MCP_0896
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.703
MCP_0895
Putative oxidoreductase.
  
  
 0.692
MCP_0897
Conserved hypothetical protein; Contains the Bacterial transferase hexapeptide repeat (IPR001451).
  
  
 0.686
MCP_2279
Putative ATP-dependent helicase.
  
 
 0.586
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
 
  
 0.580
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
  
 
 0.508
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.