STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0895Putative oxidoreductase. (327 aa)    
Predicted Functional Partners:
MCP_0897
Conserved hypothetical protein; Contains the Bacterial transferase hexapeptide repeat (IPR001451).
 
  
 0.977
MCP_0896
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.912
MCP_0894
Putative glycosyltransferase.
     
 0.771
MCP_0764
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.741
MCP_0892
Putative glycosyltransferase.
  
  
 0.692
MCP_0893
Putative glycosyltransferase.
  
  
 0.692
rfbB
dTDP-glucose 4,6-dehydratase.
  
  
 0.674
MCP_0891
Hypothetical protein.
       0.660
MCP_0853
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.631
MCP_0774
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.573
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.