STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0896Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (361 aa)    
Predicted Functional Partners:
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.927
fcl
Putative GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
 
 0.926
MCP_0895
Putative oxidoreductase.
  
 0.912
MCP_0764
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 
0.901
MCP_0853
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 
0.901
MCP_0897
Conserved hypothetical protein; Contains the Bacterial transferase hexapeptide repeat (IPR001451).
 
  
 0.873
MCP_0894
Putative glycosyltransferase.
  
  
 0.803
rfbB
dTDP-glucose 4,6-dehydratase.
 
  
 0.764
MCP_0852
Putative oxidoreductase.
  
 0.721
MCP_0892
Putative glycosyltransferase.
  
  
 0.703
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.