STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0919Conserved hypothetical protein. (583 aa)    
Predicted Functional Partners:
MCP_0920
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF555 family (IPR007564).
       0.586
MCP_2066
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF371 family (IPR007171).
  
     0.534
MCP_1944
Conserved hypothetical protein; Belongs to the Peptidase M50 family (IPR008915).
  
     0.489
MCP_0257
Putative TrmB family transcriptional regulator.
  
     0.471
cbiX-2
Sirohydrochlorin cobaltochelatase.
  
     0.467
MCP_2786
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF509 family (IPR007510).
  
     0.461
MCP_2246
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF106, transmembrane family (IPR002809).
  
     0.449
cdc6-2
Cell division control protein 6 homolog; Involved in regulation of DNA replication.
  
     0.443
MCP_1055
Putative TrmB family transcriptional regulator.
  
     0.442
MCP_2814
Putative ArsR family transcriptional regulator.
  
     0.442
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.