STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0921Conserved hypothetical protein; Contains one Protein of unknown function DUF357 domain (IPR007155). (95 aa)    
Predicted Functional Partners:
MCP_0922
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF87 family (IPR002789).
       0.800
MCP_2870
Putative HTH-type transcriptional regulator.
  
     0.626
MCP_0920
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF555 family (IPR007564).
       0.597
mptD
Conserved hypothetical protein; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD); Belongs to the archaeal dihydroneopterin aldolase family.
  
     0.590
MCP_1743
Putative single-stranded-DNA-specific exonuclease RecJ.
  
     0.560
MCP_1648
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0179 family (IPR005369).
 
     0.551
MCP_1751
Conserved hypothetical protein; Similar to JAMM-like protein in Archaeoglobus fulgidus (O28085, AF_2198).
 
     0.546
eif2b
Translation initiation factor 2 beta subunit; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-beta/eIF-5 family.
  
   
 0.545
MCP_1018
Conserved hypothetical protein.
  
     0.544
MCP_0923
Hypothetical protein.
       0.529
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.