Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_0922Conserved hypothetical protein; Belongs to the Protein of unknown function DUF87 family (IPR002789). (509 aa)    
Predicted Functional Partners:
MCP_1421
Conserved hypothetical protein.
 
 
 
 0.917
MCP_0921
Conserved hypothetical protein; Contains one Protein of unknown function DUF357 domain (IPR007155).
       0.898
MCP_1422
Putative DNA double-strand break repair Rad50 ATPase.
 
   
 0.859
MCP_1423
Putative DNA double-strand break repair protein Mre11.
 
   
 0.812
MCP_0920
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF555 family (IPR007564).
       0.769
infB
Probable translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
   
   0.593
MCP_0923
Hypothetical protein.
       0.529
dphB
Probable diphthine synthase; S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.
       0.529
MCP_2974
Conserved hypothetical protein.
       0.529
MCP_1826
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF211 family (IPR003831).
 
     0.522
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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