STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0922Conserved hypothetical protein; Belongs to the Protein of unknown function DUF87 family (IPR002789). (509 aa)    
Predicted Functional Partners:
MCP_1421
Conserved hypothetical protein.
 
 
 
 0.917
MCP_0921
Conserved hypothetical protein; Contains one Protein of unknown function DUF357 domain (IPR007155).
       0.800
MCP_1422
Putative DNA double-strand break repair Rad50 ATPase.
 
   
 0.696
MCP_1423
Putative DNA double-strand break repair protein Mre11.
 
   
 0.675
MCP_0920
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF555 family (IPR007564).
       0.597
MCP_0923
Hypothetical protein.
       0.529
MCP_1826
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF211 family (IPR003831).
 
     0.522
rrp4
Putative exosome complex RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.
  
     0.502
albA
DNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
 
     0.475
MCP_1827
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF125, transmembrane family (IPR008217).
 
     0.433
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.