STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0927Putative cell surface protein; Contains seven 40-residue YVTN beta-propeller repeats (IPR011964). (352 aa)    
Predicted Functional Partners:
MCP_1284
Copper binding protein.
   
   0.722
MCP_1782
Copper binding protein.
   
   0.722
MCP_2840
Copper binding protein.
   
   0.722
MCP_2841
Copper binding protein.
   
   0.722
MCP_0487
Conserved hypothetical protein; Contains at least two Regulator of chromosome condensation, RCC1 repeats (IPR000408).
      0.642
MCP_1283
Putative subtilisin; Belongs to the peptidase S8 family.
 
    0.641
MCP_0885
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
  
 0.507
MCP_2388
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
  
 0.502
MCP_0884
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
  
 0.471
MCP_1017
Putative surface layer protein; Contains two PKD domains (IPR000601).
      0.461
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.