STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0978Conserved hypothetical protein; Contains one Rieske [2Fe-2S] region domain (IPR005806). (128 aa)    
Predicted Functional Partners:
MCP_1732
Sulfite reductase.
  
 
 0.950
MCP_0975
Conserved hypothetical protein; Contains one Rieske [2Fe-2S] region domain (IPR005806).
 
     0.921
MCP_0977
Conserved hypothetical protein.
 
    0.826
MCP_2598
NADH oxidase.
  
 
 0.821
MCP_0976
Putative glutaredoxin.
       0.782
MCP_0404
Conserved hypothetical protein; Contains one YHS domain (IPR007029); Contains one TRASH domain (IPR011017).
   
   0.761
cobA
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.569
MCP_0974
Hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216).
       0.564
fdhC
Putative formate transporter.
  
  
 0.495
cysG
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase; Bifunctional protein.
  
  
 0.407
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.