Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0986ABC transporter ATP binding protein. (301 aa)    
Predicted Functional Partners:
MCP_0985
Putative ABC transporter.
 
 
 0.925
MCP_0992
Putative ABC transporter.
 
 
 0.714
MCP_1202
Putative ABC transporter.
 
 
 0.680
MCP_1236
Putative ABC transporter.
 
 
 0.623
MCP_0984
Conserved hypothetical protein.
       0.618
MCP_0993
Conserved hypothetical protein.
 
  
 0.604
MCP_1203
Conserved hypothetical protein.
 
  
 0.588
MCP_1561
Putative peptide ABC transporter ATP binding protein.
    
0.536
MCP_0987
Hypothetical protein.
       0.499
MCP_0255
ABC transporter permease protein.
 
  
 0.468
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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