STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htpX-2Probable protease HtpX homolog; Belongs to the peptidase M48B family. (287 aa)    
Predicted Functional Partners:
MCP_0632
Conserved hypothetical protein; Contains one Amino acid-binding ACT domain (IPR002912).
  
    0.813
MCP_2676
Conserved hypothetical protein; Belongs to the GHMP kinase-like, archaeal family (IPR012043).
  
    0.803
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.727
MCP_2148
Conserved hypothetical protein; Belongs to the Auxin efflux carrier family (IPR004776).
  
  
 0.671
ilvD-1
Dihydroxy-acid dehydratase.
  
 
 0.613
ilvD-2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.613
lon
ATP-dependent protease La; Belongs to the peptidase S16 family.
  
 
 0.475
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
  
 
 0.462
MCP_0995
Putative S1 family peptidase.
     
 0.461
MCP_0970
Putative FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
 
 0.458
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.