STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htpX-2Probable protease HtpX homolog; Belongs to the peptidase M48B family. (287 aa)    
Predicted Functional Partners:
MCP_2148
Conserved hypothetical protein; Belongs to the Auxin efflux carrier family (IPR004776).
  
  
 0.753
MCP_0632
Conserved hypothetical protein; Contains one Amino acid-binding ACT domain (IPR002912).
  
    0.732
MCP_2676
Conserved hypothetical protein; Belongs to the GHMP kinase-like, archaeal family (IPR012043).
  
    0.707
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.670
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.633
pycA
Putative pyruvate carboxylase subunit A.
  
 
 0.602
MCP_0995
Putative S1 family peptidase.
     
 0.489
MCP_0989
Glutamate synthase.
  
  
 0.471
MCP_0861
Similar to 3-hexulose-6-phosphate synthase in Methanosarcina barkeri (Q46DA4).
     
 0.447
MCP_1474
alanyl-tRNA synthetase-related protein.
  
    0.433
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.