STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1061Conserved hypothetical protein. (149 aa)    
Predicted Functional Partners:
MCP_1060
Conserved hypothetical protein; Belongs to the UPF0288 family.
  
    0.905
MCP_1062
Belongs to the Uncharacterised conserved protein UCP018781 family (IPR012356).
       0.899
MCP_1063
Putative CoA enzyme activase.
       0.899
MCP_1064
Conserved hypothetical protein.
       0.890
MCP_1065
Conserved hypothetical protein; Belongs to the Protein of unknown function UCP019164 family (IPR011312).
       0.890
MCP_1058
Putative phosphatase.
       0.746
atw-2
Putative methylcoenzyme M reductase system component A2.
       0.623
MCP_1069
Putative carboxymuconolactone decarboxylase; Contains one Alkylhydroperoxidase AhpD core domain (IPR004675).
       0.582
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.