Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_1068Hypothetical protein. (470 aa)    
Predicted Functional Partners:
MCP_1067
Hypothetical protein.
       0.645
MCP_1069
Putative carboxymuconolactone decarboxylase; Contains one Alkylhydroperoxidase AhpD core domain (IPR004675).
 
    0.619
MCP_1078
ABC transporter substrate binding protein.
 
     0.534
MCP_1066
Hypothetical protein.
       0.505
MCP_0843
Conserved hypothetical protein.
 
    0.464
MCP_1324
Conserved hypothetical protein; Contains one ATP-grasp fold, DUF201-type domain (IPR003806).
  
     0.431
secD
Putative protein-export membrane protein SecD; Involved in protein export.
 
   
 0.409
endA
tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
  
     0.405
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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