STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1073Putative carbon monoxide dehydrogenase accessory protein. (248 aa)    
Predicted Functional Partners:
MCP_0718
Conserved hypothetical protein; Belongs to the CO dehydrogenase/acetyl-CoA synthase delta subunit family (IPR004486).
 
  
 0.813
MCP_0989
Glutamate synthase.
  
  
 0.639
MCP_1072
Putative nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
       0.497
dtdA
D-tyrosyl-tRNA(Tyr) deacylase/cell division protein FtsZ homolog; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo; Belongs to the FtsZ family.
     
 0.492
MCP_0617
4Fe-4S ferredoxin, iron-sulfur binding protein.
  
  
 0.486
isf
Iron-sulfur flavoprotein.
 
   
 0.452
MCP_1678
Conserved hypothetical protein.
  
   
 0.438
MCP_1733
Conserved hypothetical protein; Contains one Rubredoxin-type Fe(Cys)4 protein domain (IPR004039).
 
   
 0.435
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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