STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1078ABC transporter substrate binding protein. (337 aa)    
Predicted Functional Partners:
MCP_1080
ABC transporter ATP binding protein.
 
  
 0.990
MCP_1079
ABC transporter permease protein.
 
  
 0.986
rps14p
30S ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.642
MCP_2213
Conserved hypothetical protein.
  
     0.612
MCP_1068
Hypothetical protein.
 
     0.534
MCP_1977
Putative 3-hexulose-6-phosphate isomerase.
 
     0.500
MCP_0799
Metal dependent transcriptional regulator.
  
  
 0.497
MCP_2812
Conserved hypothetical protein; Contains one Cytochrome c biogenesis protein, transmembrane region domain (IPR003834).
 
     0.494
MCP_2940
Belongs to the Conserved hypothetical protein 374 family (IPR005242).
 
  
 0.488
MCP_1081
Conserved hypothetical protein; Contains one Formylmethanofuran dehydrogenase, subunit E region domain (IPR003814).
       0.482
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.