STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1078ABC transporter substrate binding protein. (337 aa)    
Predicted Functional Partners:
MCP_1080
ABC transporter ATP binding protein.
 
  
 0.998
MCP_1079
ABC transporter permease protein.
 
  
 0.986
rps14p
30S ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.740
MCP_2213
Conserved hypothetical protein.
  
     0.612
MCP_1804
Putative cation transporter.
  
  
 0.600
MCP_1068
Hypothetical protein.
 
     0.546
MCP_2812
Conserved hypothetical protein; Contains one Cytochrome c biogenesis protein, transmembrane region domain (IPR003834).
 
     0.506
MCP_1977
Putative 3-hexulose-6-phosphate isomerase.
 
     0.500
MCP_1586
Conserved hypothetical protein.
 
   
 0.495
MCP_2940
Belongs to the Conserved hypothetical protein 374 family (IPR005242).
 
    0.489
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.