Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
MCP_1080ABC transporter ATP binding protein. (247 aa)    
Predicted Functional Partners:
MCP_1079
ABC transporter permease protein.
 
 
 0.999
MCP_1078
ABC transporter substrate binding protein.
 
  
 0.990
MCP_1081
Conserved hypothetical protein; Contains one Formylmethanofuran dehydrogenase, subunit E region domain (IPR003814).
       0.859
MCP_0799
Metal dependent transcriptional regulator.
  
  
 0.677
MCP_1082
Putative nucleoside 2-deoxyribosyltransferase.
       0.553
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.536
MCP_1531
Putative serine/threonine kinase.
       0.529
MCP_1532
Conserved hypothetical protein; Contains one KH domain (IPR004087); Contains one KH, type 1 domain (IPR004088).
       0.529
rpl14p
50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
 
   
 0.521
MCP_0380
Putative cobalt ABC transporter ATP binding protein.
   
0.512
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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