STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1085Putative truncated cobalamin biosynthesis protein. (236 aa)    
Predicted Functional Partners:
MCP_1084
Putative cobalt ABC transporter permease protein.
 
 0.997
MCP_1087
Conserved hypothetical protein.
 
 0.995
MCP_1086
Putative truncated cobalamin biosynthesis protein.
 
 
 0.990
MCP_1083
Putative cobalt ABC transporter ATP binding protein.
 
 
 0.973
MCP_0798
Putative cobalt ABC transporter permease protein.
 
 
 0.932
MCP_0450
Putative cobalt ABC transporter ATP binding protein.
 
 
 0.917
MCP_0797
Putative cobalt ABC transporter ATP binding protein.
 
 
 0.914
MCP_0796
Putative cobalamin biosynthesis protein.
  
  
 
0.905
MCP_2272
Belongs to the Conserved hypothetical protein 268 family (IPR005232).
 
    0.530
MCP_0138
CpmA homolog.
 
    0.529
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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