STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1091Putative endonuclease IV. (291 aa)    
Predicted Functional Partners:
MCP_2072
Conserved hypothetical protein; Contains one Xylose isomerase-like TIM barrel domain (IPR012307).
    
 0.916
MCP_1129
Exodeoxyribonuclease.
   
 
 0.879
MCP_2214
Conserved hypothetical protein; Contains one Endonuclease/exonuclease/phosphatase domain (IPR005135).
   
 
 0.863
MCP_1451
Putative endonuclease III.
  
 
 0.826
MCP_2373
Conserved hypothetical protein.
  
 
 0.820
MCP_2959
Putative endonuclease III.
  
 
 0.820
MCP_2418
Putative DNA glycosidase.
   
 
 0.753
MCP_1045
Putative family B DNA polymerase.
 
 
 
 0.724
pol
Family B DNA polymerase.
 
 
 
 0.712
MCP_1434
Putative family B DNA polymerase.
 
 
 
 0.704
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.