Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
MCP_1091Putative endonuclease IV. (291 aa)    
Predicted Functional Partners:
MCP_2072
Conserved hypothetical protein; Contains one Xylose isomerase-like TIM barrel domain (IPR012307).
    
 0.910
MCP_1129
Exodeoxyribonuclease.
   
 
 0.881
MCP_1451
Putative endonuclease III.
  
 
 0.866
MCP_2214
Conserved hypothetical protein; Contains one Endonuclease/exonuclease/phosphatase domain (IPR005135).
   
 
 0.813
MCP_2418
Putative DNA glycosidase.
   
 
 0.782
MCP_2373
Conserved hypothetical protein.
  
 
 0.772
MCP_2959
Putative endonuclease III.
  
 
 0.772
MCP_1045
Putative family B DNA polymerase.
 
 
 
 0.720
pol
Family B DNA polymerase.
 
 
 
 0.707
MCP_1434
Putative family B DNA polymerase.
 
 
 
 0.699
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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