STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdrD-2Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D. (320 aa)    
Predicted Functional Partners:
MCP_0508
Similar to L(+)-tartrate dehydratase subunit beta TtdB in Escherichia coli. (P0AC35).
    
 0.917
MCP_0509
Similar to L(+)-tartrate dehydratase subunit alpha TtdB in Escherichia coli. (P05847).
    
 0.916
hdrD-1
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D.
  
  
 
0.915
MCP_1139
Putative glycerol-3-phosphate dehydrogenase.
 
  
 0.899
MCP_1108
Conserved hypothetical protein.
  
  
 0.878
MCP_0281
Putative FAD linked oxidase.
  
 0.644
lldP
Putative L-lactate permease.
  
  
 0.551
MCP_1109
Hypothetical protein; Similar to Putative general stress protein B in uncultured methanogenic archaeon (Q0W564).
       0.528
hdrB-2
CoB--CoM heterodisulfide reductase subunit B.
 
 
 0.523
hdrC-2
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit C.
 
 
 0.509
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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