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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1108Conserved hypothetical protein. (325 aa)    
Predicted Functional Partners:
MCP_1139
Putative glycerol-3-phosphate dehydrogenase.
  
 0.994
egsA
Glycerol-1-phosphate dehydrogenase [NAD(P)]; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.
    
  0.901
hdrD-2
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D.
  
  
 0.878
MCP_1109
Hypothetical protein; Similar to Putative general stress protein B in uncultured methanogenic archaeon (Q0W564).
       0.524
aqpM
Aquaporin.
  
  
 0.514
hdrD-1
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D.
  
  
 0.483
MCP_2315
Conserved hypothetical protein; Contains at least one Cysteine-rich region, CCG domain (IPR004017).
  
  
 0.483
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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