MCP_1124 protein (Methanocella paludicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCP_1124

GCN5-related N-acetyltransferase family protein. (158 aa)

Predicted Functional Partners:

rpl23p

0.753

rpl18p

0.685

rpl3p

0.676

rpl32e

0.675

rpl37ae

0.644

rpl29p

0.632

rpl31e

0.627

rpl30e

0.627

rpl24e

0.621

rpl21e

0.616

Your Current Organism:

Methanocella paludicola

NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCP_1124	rpl18p	MCP_1124	MCP_2240	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.685
MCP_1124	rpl21e	MCP_1124	MCP_0723	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.616
MCP_1124	rpl23p	MCP_1124	MCP_2222	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.753
MCP_1124	rpl24e	MCP_1124	MCP_1039	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L24e; Binds to the 23S rRNA.	0.621
MCP_1124	rpl29p	MCP_1124	MCP_2227	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.	0.632
MCP_1124	rpl30e	MCP_1124	MCP_1220	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family.	0.627
MCP_1124	rpl31e	MCP_1124	MCP_0012	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.	0.627
MCP_1124	rpl32e	MCP_1124	MCP_2238	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L32e.	0.675
MCP_1124	rpl37ae	MCP_1124	MCP_2625	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L37Ae; Binds to the 23S rRNA.	0.644
MCP_1124	rpl3p	MCP_1124	MCP_2220	GCN5-related N-acetyltransferase family protein.	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.676
rpl18p	MCP_1124	MCP_2240	MCP_1124	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	GCN5-related N-acetyltransferase family protein.	0.685
rpl18p	rpl21e	MCP_2240	MCP_0723	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
rpl18p	rpl23p	MCP_2240	MCP_2222	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.999
rpl18p	rpl24e	MCP_2240	MCP_1039	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L24e; Binds to the 23S rRNA.	0.999
rpl18p	rpl29p	MCP_2240	MCP_2227	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.	0.999
rpl18p	rpl30e	MCP_2240	MCP_1220	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999
rpl18p	rpl31e	MCP_2240	MCP_0012	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.	0.999
rpl18p	rpl32e	MCP_2240	MCP_2238	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L32e.	0.999
rpl18p	rpl37ae	MCP_2240	MCP_2625	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L37Ae; Binds to the 23S rRNA.	0.999
rpl18p	rpl3p	MCP_2240	MCP_2220	50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.999

page 1 of 6

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About