STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ogtmethylated-DNA--protein-cysteine methyltransferase. (164 aa)    
Predicted Functional Partners:
MCP_1124
GCN5-related N-acetyltransferase family protein.
  
    0.598
MCP_2418
Putative DNA glycosidase.
  
  
 0.593
ruvB
Holliday junction ATP-dependent DNA helicase RuvB.
 
   
 0.587
MCP_2043
Putative UvrABC system protein A.
 
   
 0.548
ruvA
Holliday junction ATP-dependent DNA helicase RuvA.
 
   
 0.548
MCP_1126
Conserved hypothetical protein.
       0.532
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
  
 0.528
MCP_1423
Putative DNA double-strand break repair protein Mre11.
  
  
 0.497
MCP_0832
DNA repair helicase.
     
 0.492
MCP_1749
NUDIX hydrolase.
  
  
 0.485
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.