STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iorAIndolepyruvate oxidoreductase subunit IorA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (592 aa)    
Predicted Functional Partners:
iorB
Indolepyruvate oxidoreductase subunit IorB.
 
 0.989
MCP_0989
Glutamate synthase.
 
  
 0.747
MCP_1358
Putative phosphoadenosine phosphosulfate reductase.
  
  
 0.652
MCP_1256
Pyruvate/ketoisovalerate oxidoreductase common subunit gamma; Bifunctional protein.
  
 
 0.584
MCP_2611
Pyruvate/ketoisovalerate oxidoreductase common subunit gamma; Bifunctional protein.
  
 
 0.584
MCP_1191
Conserved hypothetical protein; Contains two Amino acid-binding ACT domains (IPR002912).
 
    0.583
MCP_1186
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF116 family (IPR002829).
       0.538
MCP_1189
Phenylacetate-coenzyme A ligase.
  
    0.519
MCP_2918
acetyl-CoA synthetase.
   
 
 0.482
MCP_1185
Hypothetical protein.
       0.455
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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