Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_1195ABC transporter permease protein. (394 aa)    
Predicted Functional Partners:
MCP_1196
ABC transporter ATP binding subunit.
  
 0.929
MCP_0256
ABC transporter ATP binding protein.
  
 0.830
MCP_1197
PadR-like family transcriptional regulator.
     
 0.776
MCP_0562
ABC transporter ATP binding protein.
  
 0.735
MCP_2633
ABC transporter ATP binding protein.
  
 0.713
MCP_1366
ABC transporter ATP binding protein.
  
 0.696
MCP_0566
ABC transporter ATP binding protein.
 
  
 0.687
MCP_0567
ABC transporter ATP binding protein.
 
  
 0.686
MCP_2512
Similar to Nod factor export ATP-binding protein I in Rhizobium sp. (strain N33) (P72335).
  
 0.667
MCP_1105
ABC transporter ATP binding protein.
  
 0.640
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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