STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1196ABC transporter ATP binding subunit. (338 aa)    
Predicted Functional Partners:
MCP_1195
ABC transporter permease protein.
  
 0.929
MCP_1197
PadR-like family transcriptional regulator.
  
  
 0.920
MCP_2632
ABC transporter permease protein.
 
  
 0.694
MCP_0255
ABC transporter permease protein.
 
  
 0.677
MCP_0564
ABC transporter permease protein.
 
  
 0.578
MCP_1194
Conserved hypothetical protein.
       0.547
MCP_1198
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594).
       0.522
MCP_1868
ABC transporter permease protein.
 
  
 0.478
MCP_0684
ABC transporter permease protein.
 
  
 0.477
MCP_0565
ABC transporter permease protein.
 
  
 0.475
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.