STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1197PadR-like family transcriptional regulator. (106 aa)    
Predicted Functional Partners:
MCP_1196
ABC transporter ATP binding subunit.
  
    0.909
MCP_1195
ABC transporter permease protein.
     
 0.778
MCP_0256
ABC transporter ATP binding protein.
  
    0.617
MCP_1366
ABC transporter ATP binding protein.
  
    0.617
MCP_2512
Similar to Nod factor export ATP-binding protein I in Rhizobium sp. (strain N33) (P72335).
  
    0.617
MCP_2633
ABC transporter ATP binding protein.
  
    0.617
MCP_1194
Conserved hypothetical protein.
       0.546
MCP_1198
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594).
       0.517
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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