STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1202Putative ABC transporter. (375 aa)    
Predicted Functional Partners:
MCP_1201
ABC transporter ATP binding protein.
 
 
 0.955
MCP_1203
Conserved hypothetical protein.
 
    0.934
MCP_0991
ABC transporter ATP binding protein.
 
 
 0.843
MCP_0986
ABC transporter ATP binding protein.
 
 
 0.832
MCP_1237
ABC transporter ATP binding protein.
 
 
 0.783
MCP_1300
ABC transporter ATP binding protein.
 
 
 0.725
MCP_0993
Conserved hypothetical protein.
 
    0.724
MCP_0468
ABC transporter ATP binding protein.
 
 
 0.714
MCP_1847
ABC transporter ATP binding protein.
 
 
 0.714
MCP_1105
ABC transporter ATP binding protein.
 
 
 0.707
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.