STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1236Putative ABC transporter. (286 aa)    
Predicted Functional Partners:
MCP_1237
ABC transporter ATP binding protein.
 
 
 0.904
MCP_0993
Conserved hypothetical protein.
 
    0.709
MCP_1203
Conserved hypothetical protein.
 
    0.709
MCP_1235
MFS transporter.
     
 0.693
MCP_0991
ABC transporter ATP binding protein.
 
 
 0.652
MCP_0986
ABC transporter ATP binding protein.
 
 
 0.623
MCP_1201
ABC transporter ATP binding protein.
 
 
 0.618
MCP_1240
ABC transporter ATP binding protein.
 
 
 0.562
MCP_1238
Hypothetical protein.
       0.506
MCP_1300
ABC transporter ATP binding protein.
 
 
 0.484
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.