Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1242ABC transporter ATP binding protein. (295 aa)    
Predicted Functional Partners:
MCP_2805
ABC transporter ATP binding protein.
 
    
0.906
MCP_1243
Putative ABC transporter.
 
  
 0.886
MCP_1244
Putative ABC transporter.
 
  
 0.866
MCP_2523
ABC transporter ATP binding protein.
    
0.859
MCP_1241
Putative ABC transporter.
 
 
 0.782
MCP_1632
Putative ABC transporter.
  
     0.632
MCP_0255
ABC transporter permease protein.
  
 0.598
MCP_1236
Putative ABC transporter.
 
 
 0.481
MCP_1195
ABC transporter permease protein.
  
 0.451
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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