STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1245Putative TrmB family transcriptional regulator. (281 aa)    
Predicted Functional Partners:
comD/comE
Sulfopyruvate decarboxylase.
  
    0.658
MCP_0442
Putative TrmB family transcriptional regulator.
  
     0.570
MCP_1672
Conserved hypothetical protein.
 
     0.548
MCP_1246
Conserved hypothetical protein; Belongs to the Protein of unknown function Mtu_121 family (IPR011610); Contains one O-methyltransferase, N-terminal domain (IPR003455).
       0.538
MCP_0329
Putative transcriptional regulator.
 
   
 0.533
MCP_1247
Putative MarR family transcriptional regulator.
 
   
 0.483
MCP_2275
Putative phosphoesterase.
 
     0.423
ef1b
Elongation factor 1-beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
 
     0.410
MCP_0401
Putative ABC transporter.
 
    0.409
MCP_1128
Putative 4-oxalocrotonate tautomerase.
  
     0.409
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.