STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_1248Putative carbon-nitrogen hydrolase. (310 aa)    
Predicted Functional Partners:
speB
Agmatinase; Belongs to the arginase family.
   
 0.931
pycA
Putative pyruvate carboxylase subunit A.
     
 0.722
MCP_1247
Putative MarR family transcriptional regulator.
 
  
 0.717
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
 
 
 
 0.680
MCP_2438
Asparagine synthase.
     
 0.643
MCP_2360
Aldehyde dehydrogenase.
  
 
 0.634
MCP_0174
Conserved hypothetical protein; Contains one ThiJ/PfpI domain (IPR002818).
  
 
 0.627
MCP_2085
Conserved hypothetical protein; Contains one ThiJ/PfpI domain (IPR002818).
  
 
 0.627
pfpI
Intracellular protease 1.
  
 
 0.627
MCP_0793
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.568
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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