STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1249Conserved hypothetical protein. (264 aa)    
Predicted Functional Partners:
MCP_1794
Conserved hypothetical protein; Contains one von Willebrand factor, type A domain (IPR002035).
  
     0.614
mcm
Minichromosome maintenance protein MCM; Belongs to the MCM family.
       0.552
MCP_1251
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF424 family (IPR007355).
       0.513
MCP_2586
Conserved hypothetical protein; Contains one Bacterio-opsin activator, HTHdomain (IPR007050).
  
     0.512
MCP_2734
Conserved hypothetical protein.
  
     0.509
MCP_2394
Conserved hypothetical protein.
  
     0.447
MCP_2095
Conserved hypothetical protein.
  
     0.444
MCP_1793
Putative AAA ATPase.
  
     0.440
MCP_0563
Conserved hypothetical protein.
  
     0.431
MCP_0536
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594).
  
     0.426
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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