STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_1264Putative plasma-membrane proton-efflux P-type ATPase. (811 aa)    
Predicted Functional Partners:
MCP_2468
P-type ATPase.
  
  
 
0.907
MCP_1274
Putative plasma-membrane proton-efflux P-type ATPase.
  
  
 
0.905
MCP_1265
Conserved hypothetical protein; Belongs to the Amylo-alpha-1,6-glucosidase family (IPR010401).
       0.648
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
  
 
 0.631
rps9p
30S ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
  
 
 
 0.618
pgk-2
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
 
 
 0.603
rps15p
30S ribosomal protein S15P/S13e.
 
 
 
 0.582
rps8p
30S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
   0.577
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
   
 
 0.577
rps13p
30S ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
   
   0.572
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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