STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1305ABC transporter ATP binding protein. (546 aa)    
Predicted Functional Partners:
MCP_1306
Putative cobalt ABC transporter.
 
 
 0.967
MCP_1562
Putative peptide ABC transporter permease protein.
 
 0.947
MCP_1563
Putative peptide ABC transporter permease protein.
 
 
 0.873
MCP_0798
Putative cobalt ABC transporter permease protein.
  
 0.832
MCP_1084
Putative cobalt ABC transporter permease protein.
  
 0.832
MCP_1564
Putative peptide ABC transporter peptide binding protein.
 
 0.824
MCP_0382
Putative cobalt ABC transporter.
 
 
 0.780
mcrA
Methyl-coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.
    
 
 0.749
MCP_1823
ABC transporter substrate binding protein.
 
 
 0.740
mcrG
Methyl-coenzyme M reductase gamma subunit.
    
   0.718
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.