STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1305ABC transporter ATP binding protein. (546 aa)    
Predicted Functional Partners:
MCP_1306
Putative cobalt ABC transporter.
 
 
 0.980
MCP_1562
Putative peptide ABC transporter permease protein.
  
 0.901
MCP_0382
Putative cobalt ABC transporter.
 
 
 0.863
MCP_0798
Putative cobalt ABC transporter permease protein.
  
 
 0.843
MCP_1084
Putative cobalt ABC transporter permease protein.
  
 
 0.843
MCP_1561
Putative peptide ABC transporter ATP binding protein.
 
  
0.825
MCP_1304
Hypothetical protein.
 
 
 0.804
MCP_1563
Putative peptide ABC transporter permease protein.
  
 0.776
MCP_0381
Putative cobalt ABC transporter ATP binding protein.
 
 
0.616
MCP_0380
Putative cobalt ABC transporter ATP binding protein.
 
 
0.612
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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