Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1327Putative bacterial type II secretion system protein. (696 aa)    
Predicted Functional Partners:
MCP_1328
Putative bacterial type II secretion system protein.
 
  
 0.985
MCP_2571
Conserved hypothetical protein; Belongs to the Bacterial type II secretion system protein family (IPR001992).
 
  
 0.843
MCP_2570
Conserved hypothetical protein; Belongs to the Bacterial type II secretion system protein family (IPR001992).
 
  
 0.818
MCP_1329
Conserved hypothetical protein.
     
 0.645
MCP_0140
Putative cell division ATPase MinD.
 
  
 0.487
trmY
Conserved hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
 
    0.484
MCP_2487
Cell division ATPase MinD.
 
  
 0.480
MCP_2033
Cell division ATPase MinD.
 
  
 0.459
MCP_0574
Conserved hypothetical protein; Contains one PilT protein, N-terminal domain (IPR002716); Contains one Nucleotide binding protein, PINc domain (IPR006596).; Contains one Bacterial type II secretion system protein E domain (IPR001482).; Contains one KH, type 1 domain (IPR004088).
     
 0.454
MCP_1324
Conserved hypothetical protein; Contains one ATP-grasp fold, DUF201-type domain (IPR003806).
       0.451
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.