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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1328Putative bacterial type II secretion system protein. (678 aa)    
Predicted Functional Partners:
MCP_1327
Putative bacterial type II secretion system protein.
 
  
 0.961
MCP_2572
Putative bacterial type II secretion system protein.
 
  
 0.794
MCP_0048
Conserved hypothetical protein.
 
     0.683
MCP_0003
Conserved hypothetical protein.
 
     0.679
MCP_2246
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF106, transmembrane family (IPR002809).
  
     0.676
MCP_2297
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF1621 family (IPR012426).
  
     0.671
MCP_1329
Conserved hypothetical protein.
       0.655
MCP_0020
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF1119, archaea family (IPR010545).
  
     0.650
MCP_2705
Putative oligosaccharyl transferase.
 
   
 0.650
MCP_2972
Putative bacterial type II secretion system protein.
 
  
 0.649
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.