STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1353Hypothetical protein; Belongs to the Phosphoesterase, PA-phosphatase related family (IPR000326). (304 aa)    
Predicted Functional Partners:
rpl6p
50S ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.958
atpC-1
A-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 
 
 0.889
atpC-2
A-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 
 
 0.886
MCP_0233
Similar to peptide synthetase AdpD in Anabaena circinalis 90 (Q9K5L9).
  
 0.871
MCP_0232
Putative acyl-CoA synthetase.
  
 0.826
MCP_1724
Putative acyl-CoA synthetase.
  
 0.826
atpF-2
A-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 
 0.819
atpF-1
A-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 
 0.793
atpI-1
A-type ATP synthase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
   
 
 0.776
atpI-2
A-type ATP synthase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
   
 
 0.776
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.