Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
pdaD-2Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family. (166 aa)    
Predicted Functional Partners:
speB
Agmatinase; Belongs to the arginase family.
 
  
 0.930
rocF
Arginase; Belongs to the arginase family.
    
 0.917
pdaD-1
Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
  
  
 
0.901
argH
Argininosuccinate lyase.
     
  0.800
MCP_1355
Conserved hypothetical protein.
       0.773
dys-1
Deoxyhypusine synthase.
 
   
 0.559
MCP_1357
Hypothetical protein.
       0.555
dys-2
Deoxyhypusine synthase.
 
   
 0.486
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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