STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1365ABC transporter permease protein. (255 aa)    
Predicted Functional Partners:
MCP_1366
ABC transporter ATP binding protein.
  
 0.940
aroA-2
Putative aldolase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids.
       0.775
MCP_0565
ABC transporter permease protein.
  
  
  0.661
MCP_2633
ABC transporter ATP binding protein.
  
 0.657
MCP_2512
Similar to Nod factor export ATP-binding protein I in Rhizobium sp. (strain N33) (P72335).
  
 0.642
MCP_0564
ABC transporter permease protein.
  
  
  0.598
MCP_1368
Conserved hypothetical protein; Contains one Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain (IPR011576).
       0.525
MCP_1364
Hypothetical protein.
       0.515
MCP_0566
ABC transporter ATP binding protein.
 
  
 0.507
MCP_2511
ABC transporter permease protein; Similar to Nodulation protein J in Rhizobium sp. (strain N33) (P72336).
  
  
 
0.497
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.