STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadACadmium-transporting ATPase. (817 aa)    
Predicted Functional Partners:
MCP_1371
ArsR family transcriptional regulator.
 
  
 0.881
MCP_1372
Conserved hypothetical protein.
  
  
 0.669
MCP_0384
Copper-transporting P-type ATPase.
 
   
0.617
MCP_1369
Hypothetical protein.
       0.584
MCP_0212
Ferrous iron transport protein B.
  
 
 0.488
MCP_1368
Conserved hypothetical protein; Contains one Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain (IPR011576).
  
  
 0.476
MCP_0404
Conserved hypothetical protein; Contains one YHS domain (IPR007029); Contains one TRASH domain (IPR011017).
     
 0.460
MCP_1491
Amino acid transporter.
     
 0.448
MCP_1966
Amino acid transporter; Contains two UspA domains (IPR006016).
     
 0.448
sor
Putative superoxide reductase.
 
    0.435
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.