Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MCP_1018 | MCP_1662 | MCP_1018 | MCP_1662 | Conserved hypothetical protein. | Putative phosphoesterase. | 0.682 |
| MCP_1018 | MCP_2990 | MCP_1018 | MCP_2990 | Conserved hypothetical protein. | Single-stranded DNA-binding replication protein. | 0.554 |
| MCP_1018 | endA | MCP_1018 | MCP_1408 | Conserved hypothetical protein. | tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.646 |
| MCP_1018 | spt5 | MCP_1018 | MCP_2134 | Conserved hypothetical protein. | Putative ribosomal protein L26e; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.471 |
| MCP_1494 | endA | MCP_1494 | MCP_1408 | Conserved hypothetical protein. | tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.789 |
| MCP_1662 | MCP_1018 | MCP_1662 | MCP_1018 | Putative phosphoesterase. | Conserved hypothetical protein. | 0.682 |
| MCP_1662 | MCP_2990 | MCP_1662 | MCP_2990 | Putative phosphoesterase. | Single-stranded DNA-binding replication protein. | 0.571 |
| MCP_1662 | dnaG | MCP_1662 | MCP_0113 | Putative phosphoesterase. | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.490 |
| MCP_1662 | endA | MCP_1662 | MCP_1408 | Putative phosphoesterase. | tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.647 |
| MCP_1662 | spt5 | MCP_1662 | MCP_2134 | Putative phosphoesterase. | Putative ribosomal protein L26e; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.404 |
| MCP_2990 | MCP_1018 | MCP_2990 | MCP_1018 | Single-stranded DNA-binding replication protein. | Conserved hypothetical protein. | 0.554 |
| MCP_2990 | MCP_1662 | MCP_2990 | MCP_1662 | Single-stranded DNA-binding replication protein. | Putative phosphoesterase. | 0.571 |
| MCP_2990 | cca | MCP_2990 | MCP_0083 | Single-stranded DNA-binding replication protein. | CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | 0.546 |
| MCP_2990 | endA | MCP_2990 | MCP_1408 | Single-stranded DNA-binding replication protein. | tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.671 |
| MCP_2990 | spt5 | MCP_2990 | MCP_2134 | Single-stranded DNA-binding replication protein. | Putative ribosomal protein L26e; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.588 |
| cca | MCP_2990 | MCP_0083 | MCP_2990 | CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | Single-stranded DNA-binding replication protein. | 0.546 |
| cca | dnaG | MCP_0083 | MCP_0113 | CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.609 |
| cca | endA | MCP_0083 | MCP_1408 | CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.724 |
| cca | spt5 | MCP_0083 | MCP_2134 | CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | Putative ribosomal protein L26e; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.665 |
| dnaG | MCP_1662 | MCP_0113 | MCP_1662 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Putative phosphoesterase. | 0.490 |
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