STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1435Putative signaling protein; Contains four PAS domains (IPR000014); Contains two PAS-associated, C-terminal domains (IPR000700).; Contains three PAC motif repeats (IPR001610). (729 aa)    
Predicted Functional Partners:
MCP_1287
Putative histidine kinase; Contains two PAS domains (IPR000014); Contains two PAS-associated, C-terminal domains (IPR000700).; Contains one ATP-binding region, ATPase-like domain (IPR003594).; Contains two PAC motif repeats (IPR001610).
     0.545
MCP_1342
Putative histidine kinase; Contains two PAS domains (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains one ATP-binding region, ATPase-like domain (IPR003594).
     0.524
MCP_1908
Putative histidine kinase; Contains three PAS domains (IPR000014); Contains three PAS-associated, C-terminal domains (IPR000700).; Contains one ATP-binding region, ATPase-like domain (IPR003594).; Contains three PAC motif repeats (IPR001610).
     0.522
MCP_2253
Putative signaling protein; Contains one PAS domain (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains PAC motif repeats (IPR001610).
 
     0.468
MCP_0444
Aldo/keto reductase family protein.
    
 0.463
MCP_1179
Putative histidine kinase; Contains two PAS domains (IPR000014); Contains two PAS-associated, C-terminal domains (IPR000700).; Contains one GAF domain (IPR003018).; Contains one ATP-binding region, ATPase-like domain (IPR003594).; Contains two PAC motif repeats (IPR001610).
     0.463
MCP_1436
Putative ion transport protein.
       0.453
MCP_1388
Putative histidine kinase; Contains one PAS domain (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains one ATP-binding region, ATPase-like domain (IPR003594).; Contains one Histidine kinase, HAMP region domain (IPR003660).; Contains one Histidine kinase A, N-terminal domain (IPR003661).; Contains one Cache domain (IPR004010).
 
     0.433
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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