Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
MCP_1467Belongs to the Conserved hypothetical protein 61 family (IPR004425). (244 aa)    
Predicted Functional Partners:
MCP_1468
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF473 family (IPR007417).
  
   0.985
MCP_1469
Conserved hypothetical protein.
       0.773
MCP_1466
Conserved hypothetical protein.
       0.712
MCP_2857
Archaeosine tRNA-ribosyltransferase.
 
     0.693
psmA
Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
   
 
 0.668
MCP_1314
Conserved hypothetical protein.
  
    0.658
MCP_2281
Conserved hypothetical protein; Contains one Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain (IPR011576).
  
    0.658
MCP_2889
Conserved hypothetical protein.
  
    0.658
dnaG
Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.631
rps8e
30S ribosomal protein S8e.
 
     0.625
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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