STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1485Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
fusA
Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 
 0.641
MCP_0104
Conserved hypothetical protein; Contains one Small GTP-binding protein domain (IPR005225); Belongs to the Roadblock/LC7 family (IPR004942).
  
  
 0.615
dnaK
Heat shock protein 70; Acts as a chaperone.
  
 
 0.609
MCP_0075
Conserved hypothetical protein; Contains two Protein of unknown function DUF6, transmembrane domains (IPR000620).
   
 
 0.604
MCP_0271
Conserved hypothetical protein; Contains one Protein of unknown function DUF6, transmembrane domain (IPR000620).
   
 
 0.604
MCP_0810
Conserved hypothetical protein; Contains two Protein of unknown function DUF6, transmembrane domains (IPR000620).
   
 
 0.604
MCP_0812
Conserved hypothetical protein; Contains two Protein of unknown function DUF6, transmembrane domains (IPR000620).
   
 
 0.604
MCP_1376
Putative TrmB family transcriptional regulator.
  
    0.589
MCP_0906
Conserved hypothetical protein.
   
   0.566
gap-1
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.566
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.